FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane2_Index14_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 22806701 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 5886800 | 2.9368432 | 5.091886 | 2 |
| CCAGG | 4773600 | 2.591761 | 5.1883774 | 1 |
| CCTGG | 4768940 | 2.574908 | 6.041768 | 1 |
| GAAGA | 4868585 | 2.549256 | 5.326704 | 2 |
| CTTCT | 4985435 | 2.5363874 | 5.3729086 | 1 |
| AAGAA | 4883515 | 2.495966 | 5.0908546 | 2 |
| CTGGA | 4622405 | 2.4509742 | 8.490832 | 1 |
| TCCAG | 4494355 | 2.3686595 | 5.228676 | 2 |
| CTCCT | 4433710 | 2.3097126 | 6.688669 | 1 |
| CTGGG | 4179930 | 2.2706199 | 8.053989 | 1 |
| CAGGA | 4182680 | 2.2301521 | 5.510032 | 1 |
| CTTCA | 4286340 | 2.1928463 | 5.451387 | 1 |
| CCCAG | 4050005 | 2.1855915 | 6.8545475 | 1 |
| CTCCA | 4172030 | 2.1854818 | 7.114424 | 1 |
| CAGAA | 4035865 | 2.1004477 | 5.238594 | 1 |
| CTCTG | 3918995 | 2.054002 | 6.1792927 | 1 |
| CTGGC | 3484960 | 1.8816448 | 5.090909 | 1 |
| TGGAA | 3566835 | 1.8573112 | 5.0874624 | 2 |
| CTGAA | 3577180 | 1.8514285 | 5.379441 | 1 |
| CTCAG | 3329295 | 1.754638 | 5.934701 | 1 |
| CTTTG | 3331870 | 1.7054383 | 5.006727 | 1 |
| CTTGG | 3092660 | 1.6307743 | 5.295799 | 1 |